The TORs are good pipes. it sounds to me like what you need is a bigger main jet. Rule of thumb is that the first 1/4 of the throttle is the pilot, the middle is the needle, and the last 1/4 is the main.
I remember that the jets supplied for the TORs were on the small side. If you switched over to pod filters at the same time, you have enough airflow that they are likely too small to handle the increased airflow.
I'd consider a bigger jet before getting too worried.