Welcome aboard. I'm just up the river from you in Walnut Grove myself.
I'm afraid I don't have any help for you on the ECU issue but you might try asking in the supersport sub forum. It may also be worth while to try the ECM / fuel injection sub forum. Keep an eye out for DEcosse - he knows his way around electronics better than most.
'06 Speed Triple
'96 Adventurer Cafe Racer
and a bunch of other stuff
If everything seems under control, you're just not going fast enough - Mario Andretti