Hi,
The Air Filter and Exhausts are the obvious first steps.
One direction after that is high lift cams and high compression pistons (as fitted in the T300 Daytona Super 3), but don't overlook the brakes and suspension. You can get these parts from your Triumph dealer, or mail order from Jack Lilley. I understand this upgrade can be done without taking the engine out? The Super 3 is quoted at about 115ps, against 98ps with the Speed Triple.
Another direction is to take a look at the Wilcox site:
Wilcox Engines
Good luck,
Geoff