G'day Cafejim I also have a 00 Sprint, mine had 17000kms (just over 10000mi) when I bought it in January and also has the weird neutral finding thing. I usually flick up to second and down to get neutral: I believe this is fairly common.
Mine was pretty good in traffic but a little snatchy and did not like the low rev takeoffs that are often a part of riding when bumper to bumper. Roadduster and Charlie are right, if you blast the cobwebs out with some good fuel and new plugs things should get better.
A couple of other tweaks you could do will see a marked improvement - most of the howtos are in the inexpensive mods topic and are well worth considering if you are able. I have done the following and the bike feels awesome now - I opened it up in second on the way home from work tonight and it absolutely screamed as the front wheel started to get decidedly light.
Sorry, I digress. The following:
New NGK Iridium plugs - cleaner bottom end power;
Fuel reg mod;
bored out the baffle in exhaust - lack fiscal approval to buy race can, so far;
new air filter - Pipercross;
18 tooth front sprocket - faster acceleration and makes driving in traffic a whole lot easier.
I also serviced pretty well all the fluids as soon as I got my bike to make sure it was done right. (full service in 03 is a long time ago, I would seriously think about checking your brakes for corrosion and have a good look at the cooling system - before you blast the cobwebs out).
Hopefully things will smooth out naturally. As many will attest on this site, the 955 is an awesome motor which has a confidence inspiring strength to it. Tidy up the fuel, breathing and ignition and you will add significantly to the joy of riding your Sprint. This forum is a great source of info - the search engine is bit dodgy but there is heaps of info that should get you sorted.
Enjoy.