First off just want to say hello everybody, just bought a black 99 S3 two weeks ago and i love it

Had always admired the triples, now i own one.
Bike runs great except for when your riding around town at
steady, traffic speeds (30 - 40mph, 3 - 4k rpm). Here it stumbles/stutters a bit, almost like its starving for fuel but more subtle. Accelerate, even a little bit, and it dissappears and runs beautiful.
I'm wondering if its the injection mapping? Someone suggested to me this was an early, known, issue with the mapping on these bikes. Also, orig owner said he had it mapped after adding the exhaust. Specs below, thanks for the help.
99 S3
30k mi
Triumph factory race exhaust (carbon can)
K&N
one tooth down on front sprocket