I'm no mechanic but I'll describe a plug problem(s) I encountered on my last S3 just in case it's relevant (now or in the future).
Bike progressively got harder to start particularly when hot. Injection cleaner additived seemed to help for a while. Then one time bike won't start at all. Trailered it to dealer, bike needed new plugs due to TWO simultaeneous problems (according to head mechanic).
1. Water in fuel tank, it got in there because the drain hole in rim under filler cap was blocked (apparently not unheard of). Everytime you open filler cap water goes into fuel
2. Plugs corroded on the OUTSIDE of engine. Apparently there are no drain holes to let water run away from plugs. Not a problem under normal use because because heat causes water to evaporate. But if you put the the bike away wet and cold the plugs will corrode on the outside, which means poor spark inside! (could possibly explain your wet plugs ??)
One last thing, you mentioned you've got the TORS (off road silencers) did you get the fuel injection map to suit? Not that I would know if not having it would cause any problem.
Good luck

. It can only be something minor but I'm sure its quite frustrating