A buddy of mine just picked up an 05 Daytona - his firs t day with the bike, he was visited by the long start-up woes (and the low power of the break-in period). He immediately called the dealer and told them he wanted to bring the bike in, as he hadn't heard of the startup issues.
While there, the dealer got the Triumph rep on the phone, and this was his take on things...
1) Do not baby the bike during breakin. Go ahead and ride it.
2) To defeat the slow startup, crank the bike momentarily and then stop - shut off the bike with the emergency switch, and wait 8 seconds - turn the switch back on, and it should turn right over.
Now, this goes against their own manual stating you shouldn't use the cutoff switch - but apparently, by doing so, the computer hasn't had the data written and assumes the bike was still warm, and will start up more rich than if it was a cold start. I watched him try this routine, and the bike turned right over.
I tried it on the s3, same old business with the long starts
Additionally, the rep had made a comment suggesting that the tune for the bike opens up and allows for the full range of power after the 1k breakin period. This seems a little less than believable to me, but I'm no supermechanic so what the hell do I know.
Just found this interesting.