I've just changed the Miks for Keihins on my 98 Tbird (today!) - success, no more slider/needle jet gremlins
The Keihin rubbers are all different to the Miks, and looking at them side by side I wouldn't try & adapt them. I was lucky, came with the carbs off ebay for 100 euros.
Stock airbox is ok & cables are fine with Keihins, a little rerouting but connect up perfectly.
One other plus - the Keihins have more clearance between engine & airbox, easier fit. They also look way better built than Miks. Recommend this mod.